IL_6ZME_026

3D structure

PDB id

6ZME (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-eERF1 ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GG*CGACC

Length

7 nucleotides

Bulged bases

6ZME|1|L5|A|667

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZME_026 not in the Motif Atlas

Geometric match to IL_5J7L_247

Geometric discrepancy: 0.3354

The information below is about IL_5J7L_247

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_51454.3

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

45

Unit IDs

6ZME|1|L5|G|487
6ZME|1|L5|G|488
*
6ZME|1|L5|C|665
6ZME|1|L5|G|666
6ZME|1|L5|A|667
6ZME|1|L5|C|668
6ZME|1|L5|C|669

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain Lr

60S ribosomal protein L28