IL_6ZME_033

3D structure

PDB id

6ZME (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-eERF1 ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CG*CGG

Length

5 nucleotides

Bulged bases

6ZME|1|L5|G|1287

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZME_033 not in the Motif Atlas

Geometric match to IL_4LFB_036

Geometric discrepancy: 0.2554

The information below is about IL_4LFB_036

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_28408.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

60

Unit IDs

6ZME|1|L5|C|709
6ZME|1|L5|G|710
*
6ZME|1|L5|C|1286
6ZME|1|L5|G|1287
6ZME|1|L5|G|1288

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LE

60S ribosomal protein L6

Chain Lf

60S ribosomal protein L35a