IL_6ZME_068

3D structure

PDB id

6ZME (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-eERF1 ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CUCGCAGACCCGACGCCCGCCACG*CG

Length

26 nucleotides

Bulged bases

6ZME|1|L5|C|1707, 6ZME|1|L5|C|1709

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZME|1|L5|C|1694
6ZME|1|L5|U|1695
6ZME|1|L5|C|1696
6ZME|1|L5|G|1697
6ZME|1|L5|C|1698
6ZME|1|L5|A|1699
6ZME|1|L5|G|1700
6ZME|1|L5|A|1701
6ZME|1|L5|C|1702
6ZME|1|L5|C|1703
6ZME|1|L5|C|1704
6ZME|1|L5|G|1705
6ZME|1|L5|A|1706
6ZME|1|L5|C|1707
6ZME|1|L5|G|1708
6ZME|1|L5|C|1709
6ZME|1|L5|C|1714
6ZME|1|L5|C|1715
6ZME|1|L5|G|1716
6ZME|1|L5|C|1717
6ZME|1|L5|C|1718
6ZME|1|L5|A|1719
6ZME|1|L5|C|1720
6ZME|1|L5|G|1721
*
6ZME|1|L5|C|1841
6ZME|1|L5|G|1842

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LF

60S ribosomal protein L7

Chain LQ

60S ribosomal protein L18

Chain LT

60S ribosomal protein L21

Chain Lb

60S ribosomal protein L29