IL_6ZME_086

3D structure

PDB id

6ZME (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-eERF1 ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GUGGC*GAAUC

Length

10 nucleotides

Bulged bases

6ZME|1|L5|G|1975

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZME_086 not in the Motif Atlas

Homologous match to IL_8C3A_058

Geometric discrepancy: 0.3542

The information below is about IL_8C3A_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_30542.5

Basepair signature

cWW-L-R-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

6ZME|1|L5|G|1973
6ZME|1|L5|U|1974
6ZME|1|L5|G|1975
6ZME|1|L5|G|1976
6ZME|1|L5|C|1977
*
6ZME|1|L5|G|1989
6ZME|1|L5|A|1990
6ZME|1|L5|A|1991
6ZME|1|L5|U|1992
6ZME|1|L5|C|1993

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LI

60S ribosomal protein L10-like

Chain Ls

60S acidic ribosomal protein P0

Chain Lt

60S ribosomal protein L12