IL_6ZME_114

3D structure

PDB id

6ZME (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-eERF1 ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGGUC*GGCGCCUAGC

Length

15 nucleotides

Bulged bases

6ZME|1|L5|A|3596

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZME|1|L5|G|2901
6ZME|1|L5|G|2902
6ZME|1|L5|G|2903
6ZME|1|L5|U|2904
6ZME|1|L5|C|2905
*
6ZME|1|L5|G|3589
6ZME|1|L5|G|3590
6ZME|1|L5|C|3591
6ZME|1|L5|G|3592
6ZME|1|L5|C|3593
6ZME|1|L5|C|3594
6ZME|1|L5|U|3595
6ZME|1|L5|A|3596
6ZME|1|L5|G|3597
6ZME|1|L5|C|3598

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LR

60S ribosomal protein L19

Chain SI

40S ribosomal protein S8

Chain SL

40S ribosomal protein S11