IL_6ZME_128

3D structure

PDB id

6ZME (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-eERF1 ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GA*UACC

Length

6 nucleotides

Bulged bases

6ZME|1|L5|A|4385

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZME_128 not in the Motif Atlas

Homologous match to IL_5TBW_094

Geometric discrepancy: 0.0628

The information below is about IL_5TBW_094

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_18604.1

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

46

Unit IDs

6ZME|1|L5|G|3916
6ZME|1|L5|A|3917
*
6ZME|1|L5|U|4384
6ZME|1|L5|A|4385
6ZME|1|L5|C|4386
6ZME|1|L5|C|4387

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain CH

Eukaryotic peptide chain release factor subunit 1

Chain LA

60S ribosomal protein L8