IL_6ZME_138

3D structure

PDB id

6ZME (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-eERF1 ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UUG*UG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZME_138 not in the Motif Atlas

Geometric match to IL_5TBW_104

Geometric discrepancy: 0.0921

The information below is about IL_5TBW_104

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_48779.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

16

Unit IDs

6ZME|1|L5|U|4403
6ZME|1|L5|U|4404
6ZME|1|L5|G|4405
*
6ZME|1|L5|U|4439
6ZME|1|L5|G|4440

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain CH

Eukaryotic peptide chain release factor subunit 1

Chain LI

60S ribosomal protein L10-like