IL_6ZME_140
3D structure
- PDB id
- 6ZME (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-eERF1 ribosome complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- CCAAG*CGACG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ZME_140 not in the Motif Atlas
- Homologous match to IL_8C3A_114
- Geometric discrepancy: 0.1531
- The information below is about IL_8C3A_114
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_65585.1
- Basepair signature
- cWW-L-R-tSH-tHS-cWW
- Number of instances in this motif group
- 13
Unit IDs
6ZME|1|L5|C|4412
6ZME|1|L5|C|4413
6ZME|1|L5|A|4414
6ZME|1|L5|A|4415
6ZME|1|L5|G|4416
*
6ZME|1|L5|C|4426
6ZME|1|L5|G|4427
6ZME|1|L5|A|4428
6ZME|1|L5|C|4429
6ZME|1|L5|G|4430
Current chains
- Chain L5
- 28S ribosomal RNA
Nearby chains
- Chain CE
- Coiled-coil domain-containing protein 124
- Chain CH
- Eukaryotic peptide chain release factor subunit 1
- Chain LI
- 60S ribosomal protein L10-like
- Chain Lm
- Ubiquitin-60S ribosomal protein L40
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