IL_6ZME_145

3D structure

PDB id

6ZME (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-eERF1 ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UUG*CCAAG

Length

8 nucleotides

Bulged bases

6ZME|1|L5|A|4488

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZME_145 not in the Motif Atlas

Geometric match to IL_3DD2_004

Geometric discrepancy: 0.3803

The information below is about IL_3DD2_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_09353.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

6ZME|1|L5|U|4468
6ZME|1|L5|U|4469
6ZME|1|L5|G|4470
*
6ZME|1|L5|C|4485
6ZME|1|L5|C|4486
6ZME|1|L5|A|4487
6ZME|1|L5|A|4488
6ZME|1|L5|G|4489

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LB

60S ribosomal protein L3

Chain LH

60S ribosomal protein L9

Chain Lm

Ubiquitin-60S ribosomal protein L40