IL_6ZME_152
3D structure
- PDB id
- 6ZME (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-eERF1 ribosome complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- ACAUUU*ACCAU
- Length
- 11 nucleotides
- Bulged bases
- 6ZME|1|L5|C|4670
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ZME_152 not in the Motif Atlas
- Homologous match to IL_8GLP_317
- Geometric discrepancy: 0.291
- The information below is about IL_8GLP_317
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_31690.2
- Basepair signature
- cWW-L-cWW-L-cWW-L
- Number of instances in this motif group
- 7
Unit IDs
6ZME|1|L5|A|4624
6ZME|1|L5|C|4625
6ZME|1|L5|A|4626
6ZME|1|L5|U|4627
6ZME|1|L5|U|4628
6ZME|1|L5|U|4629
*
6ZME|1|L5|A|4669
6ZME|1|L5|C|4670
6ZME|1|L5|C|4671
6ZME|1|L5|A|4672
6ZME|1|L5|U|4673
Current chains
- Chain L5
- 28S ribosomal RNA
Nearby chains
- Chain LB
- 60S ribosomal protein L3
- Chain LV
- 60S ribosomal protein L23
- Chain LW
- 60S ribosomal protein L24
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