IL_6ZME_160

3D structure

PDB id

6ZME (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-eERF1 ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CCUCGGAUAG*UGCGGAGUG

Length

19 nucleotides

Bulged bases

6ZME|1|L5|C|4757, 6ZME|1|L5|U|4758, 6ZME|1|L5|A|4764, 6ZME|1|L5|G|4870, 6ZME|1|L5|C|4871, 6ZME|1|L5|G|4873, 6ZME|1|L5|U|4876

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZME|1|L5|C|4756
6ZME|1|L5|C|4757
6ZME|1|L5|U|4758
6ZME|1|L5|C|4759
6ZME|1|L5|G|4760
6ZME|1|L5|G|4761
6ZME|1|L5|A|4762
6ZME|1|L5|U|4763
6ZME|1|L5|A|4764
6ZME|1|L5|G|4765
*
6ZME|1|L5|U|4869
6ZME|1|L5|G|4870
6ZME|1|L5|C|4871
6ZME|1|L5|G|4872
6ZME|1|L5|G|4873
6ZME|1|L5|A|4874
6ZME|1|L5|G|4875
6ZME|1|L5|U|4876
6ZME|1|L5|G|4877

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LE

60S ribosomal protein L6

Chain LH

60S ribosomal protein L9

Chain LM

60S ribosomal protein L14

Chain LO

60S ribosomal protein L13a

Chain LS

60S ribosomal protein L18a