IL_6ZME_162

3D structure

PDB id

6ZME (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-eERF1 ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CCG*CG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZME_162 not in the Motif Atlas

Geometric match to IL_7A0S_054

Geometric discrepancy: 0.3022

The information below is about IL_7A0S_054

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_15011.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

48

Unit IDs

6ZME|1|L5|C|4774
6ZME|1|L5|C|4775
6ZME|1|L5|G|4776
*
6ZME|1|L5|C|4859
6ZME|1|L5|G|4860

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LM

60S ribosomal protein L14

Chain LO

60S ribosomal protein L13a