IL_6ZME_167

3D structure

PDB id

6ZME (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-eERF1 ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GCG*CC

Length

5 nucleotides

Bulged bases

6ZME|1|L5|C|4900

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZME_167 not in the Motif Atlas

Geometric match to IL_9E6Q_083

Geometric discrepancy: 0.3227

The information below is about IL_9E6Q_083

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_05642.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

72

Unit IDs

6ZME|1|L5|G|4899
6ZME|1|L5|C|4900
6ZME|1|L5|G|4901
*
6ZME|1|L5|C|4920
6ZME|1|L5|C|4921

Current chains

Chain L5

28S ribosomal RNA

Nearby chains