IL_6ZME_195

3D structure

PDB id

6ZME (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-eERF1 ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GCUACUU*AUGCCGAC*AUGCCGAC

Length

23 nucleotides

Bulged bases

6ZME|1|S2|C|139, 6ZME|1|S2|C|142, 6ZME|1|S2|U|143

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZME|1|S2|G|130
6ZME|1|S2|C|139
6ZME|1|S2|U|140
6ZME|1|S2|A|141
6ZME|1|S2|C|142
6ZME|1|S2|U|143
6ZME|1|S2|U|144
*
6ZME|1|S2|A|175
6ZME|1|S2|U|176
6ZME|1|S2|G|177
6ZME|1|S2|C|178
6ZME|1|S2|C|179
6ZME|1|S2|G|180
6ZME|1|S2|A|181
6ZME|1|S2|C|182
*
6ZME|1|S2|A|175
6ZME|1|S2|U|176
6ZME|1|S2|G|177
6ZME|1|S2|C|178
6ZME|1|S2|C|179
6ZME|1|S2|G|180
6ZME|1|S2|A|181
6ZME|1|S2|C|182

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SG

40S ribosomal protein S6