IL_6ZME_205
3D structure
- PDB id
- 6ZME (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-eERF1 ribosome complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- UUUCGA*UG
- Length
- 8 nucleotides
- Bulged bases
- 6ZME|1|S2|U|368, 6ZME|1|S2|C|369
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ZME_205 not in the Motif Atlas
- Geometric match to IL_5Y58_001
- Geometric discrepancy: 0.3235
- The information below is about IL_5Y58_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_45649.1
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
6ZME|1|S2|U|366
6ZME|1|S2|U|367
6ZME|1|S2|U|368
6ZME|1|S2|C|369
6ZME|1|S2|G|370
6ZME|1|S2|A|371
*
6ZME|1|S2|U|393
6ZME|1|S2|G|394
Current chains
- Chain S2
- 18S ribosomal RNA
Nearby chains
- Chain L5
- Large subunit ribosomal RNA; LSU rRNA
- Chain LR
- 60S ribosomal protein L19
- Chain SI
- 40S ribosomal protein S8
- Chain SL
- 40S ribosomal protein S11
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