IL_6ZME_218

3D structure

PDB id

6ZME (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-eERF1 ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GUC*GC

Length

5 nucleotides

Bulged bases

6ZME|1|S2|U|607

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZME_218 not in the Motif Atlas

Homologous match to IL_4V88_414

Geometric discrepancy: 0.4813

The information below is about IL_4V88_414

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

6ZME|1|S2|G|606
6ZME|1|S2|U|607
6ZME|1|S2|C|608
*
6ZME|1|S2|G|635
6ZME|1|S2|C|636

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain CF

Non-structural protein 1

Chain SD

40S ribosomal protein S3

Chain SJ

40S ribosomal protein S9

Chain Se

40S ribosomal protein S30