IL_6ZME_220

3D structure

PDB id

6ZME (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-eERF1 ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CAG*CCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZME_220 not in the Motif Atlas

Geometric match to IL_1Y27_001

Geometric discrepancy: 0.1576

The information below is about IL_1Y27_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

6ZME|1|S2|C|663
6ZME|1|S2|A|664
6ZME|1|S2|G|665
*
6ZME|1|S2|C|1162
6ZME|1|S2|C|1163
6ZME|1|S2|G|1164

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SC

40S ribosomal protein S2

Chain SX

40S ribosomal protein S23