IL_6ZME_250

3D structure

PDB id

6ZME (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-eERF1 ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GUG*CC

Length

5 nucleotides

Bulged bases

6ZME|1|S2|U|1326

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZME_250 not in the Motif Atlas

Homologous match to IL_4V88_449

Geometric discrepancy: 0.1524

The information below is about IL_4V88_449

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

6ZME|1|S2|G|1325
6ZME|1|S2|U|1326
6ZME|1|S2|G|1327
*
6ZME|1|S2|C|1502
6ZME|1|S2|C|1503

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain CE

Coiled-coil domain-containing protein 124

Chain SK

40S ribosomal protein S10

Chain Sd

40S ribosomal protein S29