IL_6ZME_283

3D structure

PDB id

6ZME (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-eERF1 ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGAAGUCGG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZME_283 not in the Motif Atlas

Homologous match to IL_8P9A_305

Geometric discrepancy: 0.0577

The information below is about IL_8P9A_305

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_80252.1

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

10

Unit IDs

6ZME|1|L5|G|2847
6ZME|1|L5|G|2848
6ZME|1|L5|A|2849
6ZME|1|L5|A|2850
6ZME|1|L5|G|2851
6ZME|1|L5|U|2852
6ZME|1|L5|C|2853
6ZME|1|L5|G|2854
6ZME|1|L5|G|2855
*
6ZME|1|L5|C|3837
6ZME|1|L5|U|3838
6ZME|1|L5|G|3839
6ZME|1|L5|U|3840
6ZME|1|L5|C|3841

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LB

60S ribosomal protein L3

Chain LV

60S ribosomal protein L23