IL_6ZMI_030

3D structure

PDB id

6ZMI (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to the human LYAR-80S ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GCCCGG*UC

Length

8 nucleotides

Bulged bases

6ZMI|1|L5|C|501, 6ZMI|1|L5|C|502, 6ZMI|1|L5|C|503

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZMI_030 not in the Motif Atlas

Geometric match to IL_4LFB_007

Geometric discrepancy: 0.3375

The information below is about IL_4LFB_007

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_75289.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

4

Unit IDs

6ZMI|1|L5|G|500
6ZMI|1|L5|C|501
6ZMI|1|L5|C|502
6ZMI|1|L5|C|503
6ZMI|1|L5|G|504
6ZMI|1|L5|G|505
*
6ZMI|1|L5|U|653
6ZMI|1|L5|C|654

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LQ

60S ribosomal protein L18