IL_6ZMI_036

3D structure

PDB id

6ZMI (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to the human LYAR-80S ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

AAGG*CAGCAGCACU

Length

14 nucleotides

Bulged bases

6ZMI|1|L5|A|932, 6ZMI|1|L5|C|934, 6ZMI|1|L5|A|935, 6ZMI|1|L5|C|936

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZMI|1|L5|A|732
6ZMI|1|L5|A|733
6ZMI|1|L5|G|734
6ZMI|1|L5|G|735
*
6ZMI|1|L5|C|928
6ZMI|1|L5|A|929
6ZMI|1|L5|G|930
6ZMI|1|L5|C|931
6ZMI|1|L5|A|932
6ZMI|1|L5|G|933
6ZMI|1|L5|C|934
6ZMI|1|L5|A|935
6ZMI|1|L5|C|936
6ZMI|1|L5|U|937

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LM

60S ribosomal protein L14

Chain LS

60S ribosomal protein L18a