IL_6ZMI_043

3D structure

PDB id

6ZMI (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to the human LYAR-80S ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CUC*GCCCG

Length

8 nucleotides

Bulged bases

6ZMI|1|L5|C|1214, 6ZMI|1|L5|C|1215

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZMI_043 not in the Motif Atlas

Geometric match to IL_5ZTM_001

Geometric discrepancy: 0.3715

The information below is about IL_5ZTM_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_57744.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

22

Unit IDs

6ZMI|1|L5|C|1082
6ZMI|1|L5|U|1083
6ZMI|1|L5|C|1084
*
6ZMI|1|L5|G|1213
6ZMI|1|L5|C|1214
6ZMI|1|L5|C|1215
6ZMI|1|L5|C|1216
6ZMI|1|L5|G|1217

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LF

60S ribosomal protein L7

Chain Lb

60S ribosomal protein L29