IL_6ZMI_067
3D structure
- PDB id
- 6ZMI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- SARS-CoV-2 Nsp1 bound to the human LYAR-80S ribosome complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- CUCGCAGACCCGACGCCCGCCACG*CG
- Length
- 26 nucleotides
- Bulged bases
- 6ZMI|1|L5|C|1707, 6ZMI|1|L5|G|1708, 6ZMI|1|L5|C|1717, 6ZMI|1|L5|C|1718
- QA status
- Missing nucleotides
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6ZMI|1|L5|C|1694
6ZMI|1|L5|U|1695
6ZMI|1|L5|C|1696
6ZMI|1|L5|G|1697
6ZMI|1|L5|C|1698
6ZMI|1|L5|A|1699
6ZMI|1|L5|G|1700
6ZMI|1|L5|A|1701
6ZMI|1|L5|C|1702
6ZMI|1|L5|C|1703
6ZMI|1|L5|C|1704
6ZMI|1|L5|G|1705
6ZMI|1|L5|A|1706
6ZMI|1|L5|C|1707
6ZMI|1|L5|G|1708
6ZMI|1|L5|C|1709
6ZMI|1|L5|C|1714
6ZMI|1|L5|C|1715
6ZMI|1|L5|G|1716
6ZMI|1|L5|C|1717
6ZMI|1|L5|C|1718
6ZMI|1|L5|A|1719
6ZMI|1|L5|C|1720
6ZMI|1|L5|G|1721
*
6ZMI|1|L5|C|1841
6ZMI|1|L5|G|1842
Current chains
- Chain L5
- 28S ribosomal RNA
Nearby chains
- Chain LC
- 60S ribosomal protein L4
- Chain LF
- 60S ribosomal protein L7
- Chain LQ
- 60S ribosomal protein L18
- Chain LT
- 60S ribosomal protein L21
- Chain Lb
- 60S ribosomal protein L29
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