IL_6ZMI_074

3D structure

PDB id

6ZMI (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to the human LYAR-80S ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GUCU*AAC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZMI_074 not in the Motif Atlas

Geometric match to IL_4V9F_003

Geometric discrepancy: 0.3994

The information below is about IL_4V9F_003

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

Major groove platform

Motif group

IL_36931.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

23

Unit IDs

6ZMI|1|L5|G|1753
6ZMI|1|L5|U|1754
6ZMI|1|L5|C|1755
6ZMI|1|L5|U|1756
*
6ZMI|1|L5|A|1775
6ZMI|1|L5|A|1776
6ZMI|1|L5|C|1777

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LD

60S ribosomal protein L5

Chain LI

60S ribosomal protein L10-like