IL_6ZMI_087

3D structure

PDB id

6ZMI (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to the human LYAR-80S ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GUGGC*GAAUC

Length

10 nucleotides

Bulged bases

6ZMI|1|L5|G|1975, 6ZMI|1|L5|U|1992

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZMI_087 not in the Motif Atlas

Homologous match to IL_8C3A_058

Geometric discrepancy: 0.3221

The information below is about IL_8C3A_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_30542.5

Basepair signature

cWW-L-R-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

6ZMI|1|L5|G|1973
6ZMI|1|L5|U|1974
6ZMI|1|L5|G|1975
6ZMI|1|L5|G|1976
6ZMI|1|L5|C|1977
*
6ZMI|1|L5|G|1989
6ZMI|1|L5|A|1990
6ZMI|1|L5|A|1991
6ZMI|1|L5|U|1992
6ZMI|1|L5|C|1993

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LI

60S ribosomal protein L10-like

Chain Ls

60S acidic ribosomal protein P0

Chain Lt

60S ribosomal protein L12