IL_6ZMI_131

3D structure

PDB id

6ZMI (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to the human LYAR-80S ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CAUG*UGAUCG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZMI|1|L5|C|3948
6ZMI|1|L5|A|3949
6ZMI|1|L5|U|3950
6ZMI|1|L5|G|3951
*
6ZMI|1|L5|U|4060
6ZMI|1|L5|G|4061
6ZMI|1|L5|A|4062
6ZMI|1|L5|U|4063
6ZMI|1|L5|C|4064
6ZMI|1|L5|G|4065

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain Li

60S ribosomal protein L36

Chain Lz

60S ribosomal protein L10a

Chain SB

40S ribosomal protein S3a