IL_6ZMI_166

3D structure

PDB id

6ZMI (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to the human LYAR-80S ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GGAAACG*CUCGCC

Length

13 nucleotides

Bulged bases

6ZMI|1|L5|C|4895

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZMI|1|L5|G|4890
6ZMI|1|L5|G|4891
6ZMI|1|L5|A|4892
6ZMI|1|L5|A|4893
6ZMI|1|L5|A|4894
6ZMI|1|L5|C|4895
6ZMI|1|L5|G|4896
*
6ZMI|1|L5|C|4924
6ZMI|1|L5|U|4925
6ZMI|1|L5|C|4926
6ZMI|1|L5|G|4927
6ZMI|1|L5|C|4928
6ZMI|1|L5|C|4929

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LE

60S ribosomal protein L6

Chain LM

60S ribosomal protein L14

Chain LO

60S ribosomal protein L13a