IL_6ZMI_198
3D structure
- PDB id
- 6ZMI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- SARS-CoV-2 Nsp1 bound to the human LYAR-80S ribosome complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- CUGAC*GGAUG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ZMI_198 not in the Motif Atlas
- Geometric match to IL_5J7L_274
- Geometric discrepancy: 0.236
- The information below is about IL_5J7L_274
- Detailed Annotation
- Double sheared with non-canonical cWW
- Broad Annotation
- Double sheared
- Motif group
- IL_17948.2
- Basepair signature
- cWW-L-R-tSH-tHS-cWW
- Number of instances in this motif group
- 13
Unit IDs
6ZMI|1|S2|C|188
6ZMI|1|S2|U|189
6ZMI|1|S2|G|190
6ZMI|1|S2|A|191
6ZMI|1|S2|C|192
*
6ZMI|1|S2|G|207
6ZMI|1|S2|G|208
6ZMI|1|S2|A|209
6ZMI|1|S2|U|210
6ZMI|1|S2|G|211
Current chains
- Chain S2
- 18S ribosomal RNA
Nearby chains
- Chain SI
- 40S ribosomal protein S8
Coloring options: