IL_6ZMI_212

3D structure

PDB id

6ZMI (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to the human LYAR-80S ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CAA*UG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZMI_212 not in the Motif Atlas

Geometric match to IL_7KGA_003

Geometric discrepancy: 0.2687

The information below is about IL_7KGA_003

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_15011.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

54

Unit IDs

6ZMI|1|S2|C|527
6ZMI|1|S2|A|528
6ZMI|1|S2|A|529
*
6ZMI|1|S2|U|557
6ZMI|1|S2|G|558

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SJ

40S ribosomal protein S9

Chain Se

40S ribosomal protein S30