3D structure

PDB id
6ZMI (explore in PDB, NAKB, or RNA 3D Hub)
Description
SARS-CoV-2 Nsp1 bound to the human LYAR-80S ribosome complex
Experimental method
ELECTRON MICROSCOPY
Resolution
2.6 Å

Loop

Sequence
CGAAG*CGUAG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6ZMI_237 not in the Motif Atlas
Geometric match to IL_5J7L_037
Geometric discrepancy: 0.0794
The information below is about IL_5J7L_037
Detailed Annotation
tSH-tHW-tHS
Broad Annotation
No text annotation
Motif group
IL_17136.7
Basepair signature
cWW-tSH-tHW-tHS-cWW
Number of instances in this motif group
14

Unit IDs

6ZMI|1|S2|C|1047
6ZMI|1|S2|G|1048
6ZMI|1|S2|A|1049
6ZMI|1|S2|A|1050
6ZMI|1|S2|G|1051
*
6ZMI|1|S2|C|1067
6ZMI|1|S2|G|1068
6ZMI|1|S2|U|1069
6ZMI|1|S2|A|1070
6ZMI|1|S2|G|1071

Current chains

Chain S2
18S ribosomal RNA

Nearby chains

Chain L5
Large subunit ribosomal RNA; LSU rRNA
Chain LA
60S ribosomal protein L8
Chain SO
40S ribosomal protein S14
Chain Sa
40S ribosomal protein S26

Coloring options:


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