3D structure

PDB id
6ZMI (explore in PDB, NAKB, or RNA 3D Hub)
Description
SARS-CoV-2 Nsp1 bound to the human LYAR-80S ribosome complex
Experimental method
ELECTRON MICROSCOPY
Resolution
2.6 Å

Loop

Sequence
GUC*GUC
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6ZMI_268 not in the Motif Atlas
Geometric match to IL_4V88_465
Geometric discrepancy: 0.1176
The information below is about IL_4V88_465
Detailed Annotation
Isolated non-canonical cWW pair
Broad Annotation
No text annotation
Motif group
IL_44258.2
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
301

Unit IDs

6ZMI|1|S2|G|1706
6ZMI|1|S2|U|1707
6ZMI|1|S2|C|1708
*
6ZMI|1|S2|G|1826
6ZMI|1|S2|U|1827
6ZMI|1|S2|C|1828

Current chains

Chain S2
18S ribosomal RNA

Nearby chains

Chain CE
Cell growth-regulating nucleolar protein
Chain L5
Large subunit ribosomal RNA; LSU rRNA
Chain Ln
60S ribosomal protein L41

Coloring options:


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