IL_6ZMI_278

3D structure

PDB id

6ZMI (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to the human LYAR-80S ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CCGGG*CCCUGG

Length

11 nucleotides

Bulged bases

6ZMI|1|S2|C|1774

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZMI|1|S2|C|1755
6ZMI|1|S2|C|1756
6ZMI|1|S2|G|1757
6ZMI|1|S2|G|1758
6ZMI|1|S2|G|1759
*
6ZMI|1|S2|C|1772
6ZMI|1|S2|C|1773
6ZMI|1|S2|C|1774
6ZMI|1|S2|U|1775
6ZMI|1|S2|G|1776
6ZMI|1|S2|G|1777

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain LW

60S ribosomal protein L24

Chain SG

40S ribosomal protein S6