IL_6ZMO_011

3D structure

PDB id

6ZMO (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to the human LYAR-80S-eEF1a ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CCGCUCGUGG*CGGCG

Length

15 nucleotides

Bulged bases

6ZMO|1|L5|C|185, 6ZMO|1|L5|G|186, 6ZMO|1|L5|U|187, 6ZMO|1|L5|G|188

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZMO|1|L5|C|180
6ZMO|1|L5|C|181
6ZMO|1|L5|G|182
6ZMO|1|L5|C|183
6ZMO|1|L5|U|184
6ZMO|1|L5|C|185
6ZMO|1|L5|G|186
6ZMO|1|L5|U|187
6ZMO|1|L5|G|188
6ZMO|1|L5|G|189
*
6ZMO|1|L5|C|252
6ZMO|1|L5|G|253
6ZMO|1|L5|G|254
6ZMO|1|L5|C|255
6ZMO|1|L5|G|256

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LL

60S ribosomal protein L13

Chain Lh

60S ribosomal protein L35

Chain Lj

60S ribosomal protein L37