IL_6ZMO_022

3D structure

PDB id

6ZMO (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to the human LYAR-80S-eEF1a ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AUUCAAC*GCGCAUUU

Length

15 nucleotides

Bulged bases

6ZMO|1|L5|U|687

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZMO|1|L5|A|466
6ZMO|1|L5|U|467
6ZMO|1|L5|U|468
6ZMO|1|L5|C|469
6ZMO|1|L5|A|470
6ZMO|1|L5|A|471
6ZMO|1|L5|C|472
*
6ZMO|1|L5|G|682
6ZMO|1|L5|C|683
6ZMO|1|L5|G|684
6ZMO|1|L5|C|685
6ZMO|1|L5|A|686
6ZMO|1|L5|U|687
6ZMO|1|L5|U|688
6ZMO|1|L5|U|689

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LE

60S ribosomal protein L6

Chain Lr

60S ribosomal protein L28