IL_6ZMO_034

3D structure

PDB id

6ZMO (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to the human LYAR-80S-eEF1a ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AAGG*CAGCAGCACU

Length

14 nucleotides

Bulged bases

6ZMO|1|L5|A|932, 6ZMO|1|L5|C|934, 6ZMO|1|L5|A|935, 6ZMO|1|L5|C|936

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZMO|1|L5|A|732
6ZMO|1|L5|A|733
6ZMO|1|L5|G|734
6ZMO|1|L5|G|735
*
6ZMO|1|L5|C|928
6ZMO|1|L5|A|929
6ZMO|1|L5|G|930
6ZMO|1|L5|C|931
6ZMO|1|L5|A|932
6ZMO|1|L5|G|933
6ZMO|1|L5|C|934
6ZMO|1|L5|A|935
6ZMO|1|L5|C|936
6ZMO|1|L5|U|937

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LM

60S ribosomal protein L14

Chain LS

60S ribosomal protein L18a