IL_6ZMO_101

3D structure

PDB id

6ZMO (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to the human LYAR-80S-eEF1a ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GG*CUC

Length

5 nucleotides

Bulged bases

6ZMO|1|L5|U|2769

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZMO_101 not in the Motif Atlas

Geometric match to IL_2R8S_004

Geometric discrepancy: 0.2724

The information below is about IL_2R8S_004

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

147

Unit IDs

6ZMO|1|L5|G|2549
6ZMO|1|L5|G|2550
*
6ZMO|1|L5|C|2768
6ZMO|1|L5|U|2769
6ZMO|1|L5|C|2770

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain Lg

60S ribosomal protein L34