IL_6ZMO_174

3D structure

PDB id

6ZMO (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to the human LYAR-80S-eEF1a ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GCA*UC

Length

5 nucleotides

Bulged bases

6ZMO|1|L5|C|5013

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZMO_174 not in the Motif Atlas

Geometric match to IL_4WF9_035

Geometric discrepancy: 0.2209

The information below is about IL_4WF9_035

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_05642.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

60

Unit IDs

6ZMO|1|L5|G|5012
6ZMO|1|L5|C|5013
6ZMO|1|L5|A|5014
*
6ZMO|1|L5|U|5035
6ZMO|1|L5|C|5036

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LW

60S ribosomal protein L24