IL_6ZMO_230

3D structure

PDB id

6ZMO (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to the human LYAR-80S-eEF1a ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAC*GUUU

Length

7 nucleotides

Bulged bases

6ZMO|1|S2|U|1016

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZMO_230 not in the Motif Atlas

Geometric match to IL_3R1C_018

Geometric discrepancy: 0.262

The information below is about IL_3R1C_018

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10892.2

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

58

Unit IDs

6ZMO|1|S2|G|925
6ZMO|1|S2|A|926
6ZMO|1|S2|C|927
*
6ZMO|1|S2|G|1014
6ZMO|1|S2|U|1015
6ZMO|1|S2|U|1016
6ZMO|1|S2|U|1017

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain Lc

60S ribosomal protein L30

Chain SN

40S ribosomal protein S13

Chain Sb

40S ribosomal protein S27