IL_6ZMO_248

3D structure

PDB id

6ZMO (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to the human LYAR-80S-eEF1a ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GACAGGA*UUC

Length

10 nucleotides

Bulged bases

6ZMO|1|S2|G|1285

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZMO|1|S2|G|1281
6ZMO|1|S2|A|1282
6ZMO|1|S2|C|1283
6ZMO|1|S2|A|1284
6ZMO|1|S2|G|1285
6ZMO|1|S2|G|1286
6ZMO|1|S2|A|1287
*
6ZMO|1|S2|U|1314
6ZMO|1|S2|U|1315
6ZMO|1|S2|C|1316

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SK

40S ribosomal protein S10

Chain SM

40S ribosomal protein S12

Chain Sf

Ubiquitin-40S ribosomal protein S27a