IL_6ZMO_279

3D structure

PDB id

6ZMO (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to the human LYAR-80S-eEF1a ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGCCCGG*UCC

Length

10 nucleotides

Bulged bases

6ZMO|1|L5|C|501, 6ZMO|1|L5|C|502, 6ZMO|1|L5|C|503, 6ZMO|1|L5|G|504

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZMO_279 not in the Motif Atlas

Geometric match to IL_4V88_507

Geometric discrepancy: 0.2633

The information below is about IL_4V88_507

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

6ZMO|1|L5|G|499
6ZMO|1|L5|G|500
6ZMO|1|L5|C|501
6ZMO|1|L5|C|502
6ZMO|1|L5|C|503
6ZMO|1|L5|G|504
6ZMO|1|L5|G|505
*
6ZMO|1|L5|U|653
6ZMO|1|L5|C|654
6ZMO|1|L5|C|655

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LQ

60S ribosomal protein L18