IL_6ZMT_013

3D structure

PDB id

6ZMT (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to a pre-40S-like ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GUACUU*AUGCCGAC

Length

14 nucleotides

Bulged bases

6ZMT|1|2|C|142

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZMT|1|2|G|130
6ZMT|1|2|U|140
6ZMT|1|2|A|141
6ZMT|1|2|C|142
6ZMT|1|2|U|143
6ZMT|1|2|U|144
*
6ZMT|1|2|A|175
6ZMT|1|2|U|176
6ZMT|1|2|G|177
6ZMT|1|2|C|178
6ZMT|1|2|C|179
6ZMT|1|2|G|180
6ZMT|1|2|A|181
6ZMT|1|2|C|182

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain G

40S ribosomal protein S6