IL_6ZMT_032

3D structure

PDB id

6ZMT (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to a pre-40S-like ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UCCA*UUAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZMT_032 not in the Motif Atlas

Geometric match to IL_5UNE_005

Geometric discrepancy: 0.2395

The information below is about IL_5UNE_005

Detailed Annotation

tSH-tHW

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

6ZMT|1|2|U|566
6ZMT|1|2|C|567
6ZMT|1|2|C|568
6ZMT|1|2|A|569
*
6ZMT|1|2|U|581
6ZMT|1|2|U|582
6ZMT|1|2|A|583
6ZMT|1|2|A|584

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain J

40S ribosomal protein S9

Chain Y

40S ribosomal protein S24

Chain u

Pre-rRNA-processing protein TSR1 homolog