IL_6ZMT_081

3D structure

PDB id

6ZMT (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to a pre-40S-like ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UUGG*CUA

Length

7 nucleotides

Bulged bases

6ZMT|1|2|U|1721

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZMT_081 not in the Motif Atlas

Geometric match to IL_2ZKO_001

Geometric discrepancy: 0.1998

The information below is about IL_2ZKO_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

213

Unit IDs

6ZMT|1|2|U|1720
6ZMT|1|2|U|1721
6ZMT|1|2|G|1722
6ZMT|1|2|G|1723
*
6ZMT|1|2|C|1811
6ZMT|1|2|U|1812
6ZMT|1|2|A|1813

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain u

Pre-rRNA-processing protein TSR1 homolog