IL_6ZMT_088

3D structure

PDB id

6ZMT (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to a pre-40S-like ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

ACAGGAUUG*CUCGAUU

Length

16 nucleotides

Bulged bases

6ZMT|1|2|G|1285, 6ZMT|1|2|G|1286

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZMT|1|2|A|1282
6ZMT|1|2|C|1283
6ZMT|1|2|A|1284
6ZMT|1|2|G|1285
6ZMT|1|2|G|1286
6ZMT|1|2|A|1287
6ZMT|1|2|U|1288
6ZMT|1|2|U|1289
6ZMT|1|2|G|1290
*
6ZMT|1|2|C|1309
6ZMT|1|2|U|1310
6ZMT|1|2|C|1311
6ZMT|1|2|G|1312
6ZMT|1|2|A|1313
6ZMT|1|2|U|1314
6ZMT|1|2|U|1315

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain M

40S ribosomal protein S10

Chain O

40S ribosomal protein S12

Chain f

40S ribosomal protein S29

Chain g

Ubiquitin-40S ribosomal protein S27a