IL_6ZMW_052

3D structure

PDB id

6ZMW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a human 48S translational initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

AGGUUC*GUU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZMW_052 not in the Motif Atlas

Homologous match to IL_4V88_435

Geometric discrepancy: 0.114

The information below is about IL_4V88_435

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_22046.1

Basepair signature

cWW-L-cWW-L-cWW-L

Number of instances in this motif group

2

Unit IDs

6ZMW|1|A|A|1042
6ZMW|1|A|G|1043
6ZMW|1|A|G|1044
6ZMW|1|A|U|1045
6ZMW|1|A|U|1046
6ZMW|1|A|C|1047
*
6ZMW|1|A|G|1071
6ZMW|1|A|U|1072
6ZMW|1|A|U|1073

Current chains

Chain A

18S rRNA

Nearby chains

Chain P

40S ribosomal protein S14

Chain Q

40S ribosomal protein S26

Chain y

Eukaryotic translation initiation factor 3 subunit C