IL_6ZMW_081

3D structure

PDB id

6ZMW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a human 48S translational initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GGGAUCG*CAUGAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZMW_081 not in the Motif Atlas

Homologous match to IL_8C3A_469

Geometric discrepancy: 0.1602

The information below is about IL_8C3A_469

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_10092.1

Basepair signature

cWW-tSH-tSH-L-R-cWW-L-R-cWW

Number of instances in this motif group

1

Unit IDs

6ZMW|1|A|G|1604
6ZMW|1|A|G|1605
6ZMW|1|A|G|1606
6ZMW|1|A|A|1607
6ZMW|1|A|U|1608
6ZMW|1|A|C|1609
6ZMW|1|A|G|1610
*
6ZMW|1|A|C|1629
6ZMW|1|A|A|1630
6ZMW|1|A|U|1631
6ZMW|1|A|G|1632
6ZMW|1|A|A|1633
6ZMW|1|A|A|1634
6ZMW|1|A|C|1635

Current chains

Chain A

18S rRNA

Nearby chains

Chain V

40S ribosomal protein S5

Chain d

40S ribosomal protein S19

Chain f

40S ribosomal protein S18