IL_6ZMW_094

3D structure

PDB id

6ZMW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a human 48S translational initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

(OMU)CC(PSU)U(OMU)*AUUCG

Length

11 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMU, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZMW_094 not in the Motif Atlas

Homologous match to IL_8P9A_382

Geometric discrepancy: 0.2333

The information below is about IL_8P9A_382

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31545.1

Basepair signature

cWW-L-R-L-cWW-cWW-cWW

Number of instances in this motif group

4

Unit IDs

6ZMW|1|A|OMU|116
6ZMW|1|A|C|117
6ZMW|1|A|C|118
6ZMW|1|A|PSU|119
6ZMW|1|A|U|120
6ZMW|1|A|OMU|121
*
6ZMW|1|A|A|343
6ZMW|1|A|U|344
6ZMW|1|A|U|345
6ZMW|1|A|C|346
6ZMW|1|A|G|347

Current chains

Chain A

18S rRNA

Nearby chains

Chain C

40S ribosomal protein S4, X isoform

Chain R

40S ribosomal protein S8