IL_6ZOJ_012

3D structure

PDB id

6ZOJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2-Nsp1-40S complex, composite map

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GUACUU*AUGCCGAC

Length

14 nucleotides

Bulged bases

6ZOJ|1|2|C|142, 6ZOJ|1|2|U|143

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZOJ|1|2|G|130
6ZOJ|1|2|U|140
6ZOJ|1|2|A|141
6ZOJ|1|2|C|142
6ZOJ|1|2|U|143
6ZOJ|1|2|U|144
*
6ZOJ|1|2|A|175
6ZOJ|1|2|U|176
6ZOJ|1|2|G|177
6ZOJ|1|2|C|178
6ZOJ|1|2|C|179
6ZOJ|1|2|G|180
6ZOJ|1|2|A|181
6ZOJ|1|2|C|182

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain G

40S ribosomal protein S6