IL_6ZOJ_016

3D structure

PDB id

6ZOJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2-Nsp1-40S complex, composite map

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CAUU*ACCUCGGG

Length

12 nucleotides

Bulged bases

6ZOJ|1|2|U|305, 6ZOJ|1|2|G|307

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZOJ|1|2|C|216
6ZOJ|1|2|A|217
6ZOJ|1|2|U|218
6ZOJ|1|2|U|219
*
6ZOJ|1|2|A|302
6ZOJ|1|2|C|303
6ZOJ|1|2|C|304
6ZOJ|1|2|U|305
6ZOJ|1|2|C|306
6ZOJ|1|2|G|307
6ZOJ|1|2|G|308
6ZOJ|1|2|G|309

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain E

40S ribosomal protein S4, X isoform

Chain I

40S ribosomal protein S8