IL_6ZOJ_047

3D structure

PDB id

6ZOJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2-Nsp1-40S complex, composite map

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GGAC*GUUUU

Length

9 nucleotides

Bulged bases

6ZOJ|1|2|U|1016

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZOJ_047 not in the Motif Atlas

Homologous match to IL_4V88_429

Geometric discrepancy: 0.1382

The information below is about IL_4V88_429

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_30621.4

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

66

Unit IDs

6ZOJ|1|2|G|924
6ZOJ|1|2|G|925
6ZOJ|1|2|A|926
6ZOJ|1|2|C|927
*
6ZOJ|1|2|G|1014
6ZOJ|1|2|U|1015
6ZOJ|1|2|U|1016
6ZOJ|1|2|U|1017
6ZOJ|1|2|U|1018

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain N

40S ribosomal protein S13

Chain b

40S ribosomal protein S27